Package: TSGenerator 2.0.1

TSGenerator: 'Copernicus' HR-VPP Vegetation Time-Series Processing

Provides tools for acquiring, extracting, quality-assessing, and analysing vegetation time series derived from 'Copernicus' High Resolution Vegetation Phenology and Productivity (HR-VPP) products. Supports Seasonal Trajectories (ST) and Vegetation Phenology and Productivity (VPP) products through native R access to 'WEkEO', geospatial processing, product-quality assessment, temporal completeness analysis, missingness modelling, and integrated graphical workflows. Selected functions from 'TSGenerator' 1.x are retained to support migration and legacy workflows.

Authors:Alexey Valero-Jorge [aut, cre], M. Auxiliadora Casterad Seral [aut], Jose-Tomas Alcala Nalvaiz [aut]

TSGenerator_2.0.1.tar.gz
TSGenerator_2.0.1.zip(r-4.7-any)TSGenerator_2.0.1.zip(r-4.6-any)TSGenerator_2.0.1.zip(r-4.5-any)
TSGenerator_2.0.1.tgz(r-4.6-any)TSGenerator_2.0.1.tgz(r-4.5-any)
TSGenerator_2.0.1.tar.gz(r-4.7-any)TSGenerator_2.0.1.tar.gz(r-4.6-any)
TSGenerator_2.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TSGenerator/json (API)

# Install 'TSGenerator' in R:
install.packages('TSGenerator', repos = c('https://avalero92.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/avalero92/tsgenerator/issues

On CRAN:

Conda:

5.18 score 1 stars 9 scripts 61 downloads 43 exports 83 dependencies

Last updated from:7182403622. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK160
source / vignettesOK358
linux-releaseOK169
macos-releaseOK136
macos-oldrelOK108
windows-develOK97
windows-releaseOK80
windows-oldrelOK98
wasm-releaseOK195

Exports:assess_ts_qualitycheck_wekeocheck_wekeo_integrationclassify_qualitycount_missingcount.NAdownload_stdownload_vppDownload.HRVPPDownload.STPPIDownload.VIextract_dates_from_tiff_filesextract_tsextract_vppGAM.missingGAM.plotgeneral.Qualitygeospatial_planget.Clean.IVget.Series.meanget.Series.medianget.Series.VPPget.Stackhda_auth_checkhda_clienthda_datasetshda_downloadhda_query_templatehda_searchimpute_tsmask_qualitymodel_missingnessplot_missingnessQFLAG2.Maskquality_infoquality.Seriesrenames.image.IVrenames.image.VPPrunTSappsummarize_missingnesssummarize_qualitytemporal_planTsImpute

Dependencies:askpassbase64encbitbit64bslibcachemclicliprcommonmarkcpp11crayoncrosstalkcurldigestDTevaluatefarverfastmapfontawesomefsggplot2gluegtablehdarhighrhmshtmltoolshtmlwidgetshttpuvhttr2isobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixmemoisemgcvmimenlmeopensslotelpillarpkgconfigprettyunitsprogresspromisesR6rappdirsRColorBrewerRcppreadrrlangrmarkdownS7sassscalesshinyshinycssloadersshinydashboardshinyjssourcetoolsstringistringrsysterratibbletidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunxtableyaml

Getting started with TSGenerator 2.0
Scope | WEkEO configuration | ST acquisition and extraction | VPP acquisition and extraction | Product quality versus temporal completeness | Imputation policy | Live integration check
Rendered fromgetting-started.Rmdusingknitr::rmarkdown

Last update: 2026-10-21
Started: 2026-09-29

Migrating from TSGenerator 1.x to 2.0
Why 2.0 changes the workflow | Function migration table | Acquisition | Raster extraction | VPP extraction | Quality | Missingness and completeness | Imputation | Legacy policy
Rendered frommigration-1x-to-2x.Rmdusingknitr::rmarkdown

Last update: 2026-10-21
Started: 2026-09-29

ST and VPP workflows
Seasonal Trajectories (ST) | Preview | Download | Extract PPI | Assess temporal completeness | Apply ST-QFLAG when required | Vegetation Phenology and Productivity (VPP) | Preview/download selected parameters | Product-aware extraction | VPP quality | Missingness modelling
Rendered fromst-vpp-workflows.Rmdusingknitr::rmarkdown

Last update: 2026-10-21
Started: 2026-09-29

Readme and manuals

Help Manual

Help pageTopics
Assess time-series completeness qualityassess_ts_quality
Check the TSGenerator WEkEO acquisition environmentcheck_wekeo
Run a live WEkEO integration smoke testcheck_wekeo_integration
Decode HR-VPP quality codesclassify_quality
Legacy phenology-specific missing-count interfacecount_missing
Count missing observations (legacy name)count.NA
Download Copernicus HR-VPP Seasonal Trajectoriesdownload_st
Download Copernicus HR-VPP VPP parametersdownload_vpp
Legacy wrapper for VPP downloadDownload.HRVPP
Legacy wrapper for Seasonal Trajectories downloadDownload.STPPI
Discontinued legacy VI downloaderDownload.VI
extract_dates_from_tiff_filesextract_dates_from_tiff_files
Extract polygon-level raster time seriesextract_ts
Extract HR-VPP phenology and productivity parametersextract_vpp
GAM.missingGAM.missing
GAM.plotGAM.plot
general.Qualitygeneral.Quality
Inspect inputs for the TSGenerator 2.0 geospatial enginegeospatial_plan
Legacy VI cleaning workflowget.Clean.IV
Legacy mean time-series extractorget.Series.mean
Legacy median time-series extractorget.Series.median
Retired legacy VPP extractorget.Series.VPP
Legacy VI/QFLAG stack workflowget.Stack
Test native WEkEO authenticationhda_auth_check
Create a native WEkEO HDA clienthda_client
Discover WEkEO datasetshda_datasets
Download HDA search resultshda_download
Generate an HDA V2 query templatehda_query_template
Search WEkEO using an HDA V2 queryhda_search
Impute missing values in vegetation time seriesimpute_ts
Mask raster values using HR-VPP quality flagsmask_quality
Model temporal missingness with a generalized additive modelmodel_missingness
Plot observed and modelled temporal missingnessplot_missingness
Legacy VI QFLAG2 masking workflowQFLAG2.Mask
HR-VPP quality-code definitionsquality_info
quality.Seriesquality.Series
Legacy VI file renaming helperrenames.image.IV
renames.image.VPPrenames.image.VPP
Run the TSGenerator graphical interfacerunTSapp
Summarise missingness and temporal completenesssummarize_missingness
Summarize HR-VPP quality flagssummarize_quality
Inspect and validate a vegetation time seriestemporal_plan
TsImputeTsImpute